Querying metadata from omero in python
A colleague needed a table listing image ID, image filename, and number or ROIs for all images in a project. Here’s the python script I came up with:
Query Metadata from omero Imports import omero from omero.gateway import BlitzGateway import pandas as pd import getpass Connect to omero conn = BlitzGateway('XXXXX', getpass.getpass(), host='omero.server.org') conn.connect() ········ True Retrieve datasets This sets up an iterator over the needed datasets but does not load any data into memory (yet).
[Read More]