Experimenting with the tripalv3 JSON+LD API

Experimenting with the tripalv3 JSON+LD API Introduction In this post I'm experimenting with querying the JSON-LD (LD stands for Linked Data) API of my Tripal3 genome database for Pseudomonas fluorescens SBW25. A little bit of background: Tripal is a content management system (CMS) for genomic data, based on the Drupal CMS framework. It facilitates setting up customized genomic database webservers to publish genome assemblies, annotation tracks, experimental and modeling data for one or several organisms. [Read More]

Importing data to OMERO

Getting your data into the database is one of the most frequent tasks when working with OMERO. There are two different ways to import data into OMERO: Via the desktop app OMERO.insight or via the commandline client that comes with OMERO.py. Both software packages can be found on the OMERO download site https://www.openmicroscopy.org/omero/downloads/. While the desktop app is easy and intuitive to use, a drawback of using it is that it must remain open while the data is uploaded. [Read More]