Importing data to OMERO

Getting your data into the database is one of the most frequent tasks when working with OMERO. There are two different ways to import data into OMERO: Via the desktop app OMERO.insight or via the commandline client that comes with Both software packages can be found on the OMERO download site While the desktop app is easy and intuitive to use, a drawback of using it is that it must remain open while the data is uploaded. [Read More]

Converting jupyter notebooks with embedded images to pdf.

Inserting images in a jupyter notebook is just drag and drop: This will automagically produce the image link at the drop position. And after executing the cell, the image is rendered So far so good. But ever tried to convert a notebook with embedded images to pdf or html (slides)? My first guess was: Menu -> File -> Export Notebook As -> PDF. However, this immediately runs into Error 500 tracing back to latex not being able to locate the image attachment:5444. [Read More]